[{"type":"scientific_journal_article","user_id":"83781","intvolume":"       143","doi":"10.1016/j.envsoft.2021.105101","article_number":"105101","_id":"12230","publication_status":"published","department":[{"_id":"DEP8022"}],"abstract":[{"lang":"eng","text":"Model ensembles have several benefits compared to single-model applications but are not frequently used within the lake modelling community. Setting up and running multiple lake models can be challenging and time consuming, despite the many similarities between the existing models (forcing data, hypsograph, etc.). Here we present an R package, LakeEnsemblR, that facilitates running ensembles of five different vertical one-dimensional hydrodynamic lake models (FLake, GLM, GOTM, Simstrat, MyLake). The package requires input in a standardised format and a single configuration file. LakeEnsemblR formats these files to the input required by each model, and provides functions to run and calibrate the models. The outputs of the different models are compiled into a single file, and several post-processing operations are supported. LakeEnsemblR's workflow standardisation can simplify model benchmarking and uncertainty quantification, and improve collaborations between scientists. We showcase the successful application of LakeEnsemblR for two different lakes."}],"quality_controlled":"1","publisher":"Elsevier BV","date_created":"2024-12-08T20:18:32Z","publication":"Environmental modelling & software with environment data news","publication_identifier":{"issn":["1364-8152"],"eissn":["1873-6726"]},"date_updated":"2024-12-09T11:27:54Z","language":[{"iso":"eng"}],"keyword":["Ensemble modeling","Vertical one-dimensional lake model","R package","Calibration","Thermal structure","Hydrodynamics"],"extern":"1","title":"LakeEnsemblR: An R package that facilitates ensemble modelling of lakes","volume":143,"citation":{"ama":"Moore TN, Mesman JP, Ladwig R, et al. LakeEnsemblR: An R package that facilitates ensemble modelling of lakes. <i>Environmental modelling &#38; software with environment data news</i>. 2021;143. doi:<a href=\"https://doi.org/10.1016/j.envsoft.2021.105101\">10.1016/j.envsoft.2021.105101</a>","ieee":"T. N. Moore <i>et al.</i>, “LakeEnsemblR: An R package that facilitates ensemble modelling of lakes,” <i>Environmental modelling &#38; software with environment data news</i>, vol. 143, Art. no. 105101, 2021, doi: <a href=\"https://doi.org/10.1016/j.envsoft.2021.105101\">10.1016/j.envsoft.2021.105101</a>.","van":"Moore TN, Mesman JP, Ladwig R, Feldbauer J, Olsson F, Pilla RM, et al. LakeEnsemblR: An R package that facilitates ensemble modelling of lakes. Environmental modelling &#38; software with environment data news. 2021;143.","ufg":"<b>Moore, Tadhg N. u. a.</b>: LakeEnsemblR: An R package that facilitates ensemble modelling of lakes, in: <i>Environmental modelling &#38; software with environment data news</i> 143 (2021).","mla":"Moore, Tadhg N., et al. “LakeEnsemblR: An R Package That Facilitates Ensemble Modelling of Lakes.” <i>Environmental Modelling &#38; Software with Environment Data News</i>, vol. 143, 105101, 2021, <a href=\"https://doi.org/10.1016/j.envsoft.2021.105101\">https://doi.org/10.1016/j.envsoft.2021.105101</a>.","bjps":"<b>Moore TN <i>et al.</i></b> (2021) LakeEnsemblR: An R Package That Facilitates Ensemble Modelling of Lakes. <i>Environmental modelling &#38; software with environment data news</i> <b>143</b>.","havard":"T.N. Moore, J.P. Mesman, R. Ladwig, J. Feldbauer, F. Olsson, R.M. Pilla, T. Shatwell, J.J. Venkiteswaran, A.D. Delany, H. Dugan, K.C. Rose, J.S. Read, LakeEnsemblR: An R package that facilitates ensemble modelling of lakes, Environmental Modelling &#38; Software with Environment Data News. 143 (2021).","apa":"Moore, T. N., Mesman, J. P., Ladwig, R., Feldbauer, J., Olsson, F., Pilla, R. M., Shatwell, T., Venkiteswaran, J. J., Delany, A. D., Dugan, H., Rose, K. C., &#38; Read, J. S. (2021). LakeEnsemblR: An R package that facilitates ensemble modelling of lakes. <i>Environmental Modelling &#38; Software with Environment Data News</i>, <i>143</i>, Article 105101. <a href=\"https://doi.org/10.1016/j.envsoft.2021.105101\">https://doi.org/10.1016/j.envsoft.2021.105101</a>","chicago":"Moore, Tadhg N., Jorrit P. Mesman, Robert Ladwig, Johannes Feldbauer, Freya Olsson, Rachel M. Pilla, Tom Shatwell, et al. “LakeEnsemblR: An R Package That Facilitates Ensemble Modelling of Lakes.” <i>Environmental Modelling &#38; Software with Environment Data News</i> 143 (2021). <a href=\"https://doi.org/10.1016/j.envsoft.2021.105101\">https://doi.org/10.1016/j.envsoft.2021.105101</a>.","short":"T.N. Moore, J.P. Mesman, R. Ladwig, J. Feldbauer, F. Olsson, R.M. Pilla, T. Shatwell, J.J. Venkiteswaran, A.D. Delany, H. Dugan, K.C. Rose, J.S. Read, Environmental Modelling &#38; Software with Environment Data News 143 (2021).","chicago-de":"Moore, Tadhg N., Jorrit P. Mesman, Robert Ladwig, Johannes Feldbauer, Freya Olsson, Rachel M. Pilla, Tom Shatwell, u. a. 2021. LakeEnsemblR: An R package that facilitates ensemble modelling of lakes. <i>Environmental modelling &#38; software with environment data news</i> 143. doi:<a href=\"https://doi.org/10.1016/j.envsoft.2021.105101\">10.1016/j.envsoft.2021.105101</a>, .","din1505-2-1":"<span style=\"font-variant:small-caps;\"><span style=\"font-variant:small-caps;\">Moore, Tadhg N.</span> ; <span style=\"font-variant:small-caps;\">Mesman, Jorrit P.</span> ; <span style=\"font-variant:small-caps;\">Ladwig, Robert</span> ; <span style=\"font-variant:small-caps;\">Feldbauer, Johannes</span> ; <span style=\"font-variant:small-caps;\">Olsson, Freya</span> ; <span style=\"font-variant:small-caps;\">Pilla, Rachel M.</span> ; <span style=\"font-variant:small-caps;\">Shatwell, Tom</span> ; <span style=\"font-variant:small-caps;\">Venkiteswaran, Jason J.</span> ; u. a.</span>: LakeEnsemblR: An R package that facilitates ensemble modelling of lakes. In: <i>Environmental modelling &#38; software with environment data news</i> Bd. 143, Elsevier BV (2021)"},"author":[{"full_name":"Moore, Tadhg N.","first_name":"Tadhg N.","last_name":"Moore"},{"first_name":"Jorrit P.","last_name":"Mesman","full_name":"Mesman, Jorrit P."},{"first_name":"Robert","full_name":"Ladwig, Robert","last_name":"Ladwig"},{"first_name":"Johannes","last_name":"Feldbauer","full_name":"Feldbauer, Johannes"},{"full_name":"Olsson, Freya","last_name":"Olsson","first_name":"Freya"},{"first_name":"Rachel M.","last_name":"Pilla","full_name":"Pilla, Rachel M."},{"orcid":"0000-0002-4520-7916","last_name":"Shatwell","full_name":"Shatwell, Tom","id":"86424","first_name":"Tom"},{"full_name":"Venkiteswaran, Jason J.","last_name":"Venkiteswaran","first_name":"Jason J."},{"first_name":"Austin D.","full_name":"Delany, Austin D.","last_name":"Delany"},{"full_name":"Dugan, Hilary","last_name":"Dugan","first_name":"Hilary"},{"full_name":"Rose, Kevin C.","first_name":"Kevin C.","last_name":"Rose"},{"full_name":"Read, Jordan S.","last_name":"Read","first_name":"Jordan S."}],"year":"2021","main_file_link":[{"url":"https://doi.org/10.1016/j.envsoft.2021.105101"}],"status":"public"},{"publication_status":"published","department":[{"_id":"DEP8022"}],"issue":"4","abstract":[{"text":"The modelling community has identified challenges for the integration and assessment of lake models due to the diversity of modelling approaches and lakes. In this study, we develop and assess a one-dimensional lake model and apply it to 32 lakes from a global observatory network. The data set included lakes over broad ranges in latitude, climatic zones, size, residence time, mixing regime and trophic level. Model performance was evaluated using several error assessment metrics, and a sensitivity analysis was conducted for nine parameters that governed the surface heat exchange and mixing efficiency. There was low correlation between input data uncertainty and model performance and predictions of temperature were less sensitive to model parameters than prediction of thermocline depth and Schmidt stability. The study provides guidance to where the general model approach and associated assumptions work, and cases where adjustments to model parameterisations and/or structure are required.","lang":"eng"}],"publisher":"Elsevier Science","quality_controlled":"1","type":"scientific_journal_article","user_id":"83781","intvolume":"       102","place":"Oxford","_id":"12239","doi":"10.1016/j.envsoft.2017.11.016","title":"A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network","extern":"1","volume":102,"citation":{"apa":"Bruce, L. C., Frassl, M. A., Arhonditsis, G. B., Gal, G., Hamilton, D. P., Hanson, P. C., Hetherington, A. L., Melack, J. M., Read, J. S., Rinke, K., Rigosi, A., Trolle, D., Winslow, L., Adrian, R., Ayala, A. I., Bocaniov, S. A., Boehrer, B., Boon, C., Brookes, J. D., … Hipsey, M. R. (2018). A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. <i>Environmental Modelling &#38; Software with Environment Data News </i>, <i>102</i>(4), 274–291. <a href=\"https://doi.org/10.1016/j.envsoft.2017.11.016\">https://doi.org/10.1016/j.envsoft.2017.11.016</a>","chicago":"Bruce, Louise C., Marieke A. Frassl, George B. Arhonditsis, Gideon Gal, David P. Hamilton, Paul C. Hanson, Amy L. Hetherington, et al. “A Multi-Lake Comparative Analysis of the General Lake Model (GLM): Stress-Testing across a Global Observatory Network.” <i>Environmental Modelling &#38; Software with Environment Data News </i> 102, no. 4 (2018): 274–91. <a href=\"https://doi.org/10.1016/j.envsoft.2017.11.016\">https://doi.org/10.1016/j.envsoft.2017.11.016</a>.","van":"Bruce LC, Frassl MA, Arhonditsis GB, Gal G, Hamilton DP, Hanson PC, et al. A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. Environmental modelling &#38; software with environment data news . 2018;102(4):274–91.","havard":"L.C. Bruce, M.A. Frassl, G.B. Arhonditsis, G. Gal, D.P. Hamilton, P.C. Hanson, A.L. Hetherington, J.M. Melack, J.S. Read, K. Rinke, A. Rigosi, D. Trolle, L. Winslow, R. Adrian, A.I. Ayala, S.A. Bocaniov, B. Boehrer, C. Boon, J.D. Brookes, T. Bueche, B.D. Busch, D. Copetti, A. Cortés, E. de Eyto, J.A. Elliott, N. Gallina, Y. Gilboa, N. Guyennon, L. Huang, O. Kerimoglu, J.D. Lenters, S. MacIntyre, V. Makler-Pick, C.G. McBride, S. Moreira, D. Özkundakci, M. Pilotti, F.J. Rueda, J.A. Rusak, N.R. Samal, M. Schmid, T. Shatwell, C. Snorthheim, F. Soulignac, G. Valerio, L. van der Linden, M. Vetter, B. Vinçon-Leite, J. Wang, M. Weber, C. Wickramaratne, R.I. Woolway, H. Yao, M.R. Hipsey, A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network, Environmental Modelling &#38; Software with Environment Data News . 102 (2018) 274–291.","bjps":"<b>Bruce LC <i>et al.</i></b> (2018) A Multi-Lake Comparative Analysis of the General Lake Model (GLM): Stress-Testing across a Global Observatory Network. <i>Environmental modelling &#38; software with environment data news </i> <b>102</b>, 274–291.","mla":"Bruce, Louise C., et al. “A Multi-Lake Comparative Analysis of the General Lake Model (GLM): Stress-Testing across a Global Observatory Network.” <i>Environmental Modelling &#38; Software with Environment Data News </i>, vol. 102, no. 4, 2018, pp. 274–91, <a href=\"https://doi.org/10.1016/j.envsoft.2017.11.016\">https://doi.org/10.1016/j.envsoft.2017.11.016</a>.","ufg":"<b>Bruce, Louise C. u. a.</b>: A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network, in: <i>Environmental modelling &#38; software with environment data news </i> 102 (2018), H. 4,  S. 274–291.","short":"L.C. Bruce, M.A. Frassl, G.B. Arhonditsis, G. Gal, D.P. Hamilton, P.C. Hanson, A.L. Hetherington, J.M. Melack, J.S. Read, K. Rinke, A. Rigosi, D. Trolle, L. Winslow, R. Adrian, A.I. Ayala, S.A. Bocaniov, B. Boehrer, C. Boon, J.D. Brookes, T. Bueche, B.D. Busch, D. Copetti, A. Cortés, E. de Eyto, J.A. Elliott, N. Gallina, Y. Gilboa, N. Guyennon, L. Huang, O. Kerimoglu, J.D. Lenters, S. MacIntyre, V. Makler-Pick, C.G. McBride, S. Moreira, D. Özkundakci, M. Pilotti, F.J. Rueda, J.A. Rusak, N.R. Samal, M. Schmid, T. Shatwell, C. Snorthheim, F. Soulignac, G. Valerio, L. van der Linden, M. Vetter, B. Vinçon-Leite, J. Wang, M. Weber, C. Wickramaratne, R.I. Woolway, H. Yao, M.R. Hipsey, Environmental Modelling &#38; Software with Environment Data News  102 (2018) 274–291.","chicago-de":"Bruce, Louise C., Marieke A. Frassl, George B. Arhonditsis, Gideon Gal, David P. Hamilton, Paul C. Hanson, Amy L. Hetherington, u. a. 2018. A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. <i>Environmental modelling &#38; software with environment data news </i> 102, Nr. 4: 274–291. doi:<a href=\"https://doi.org/10.1016/j.envsoft.2017.11.016\">10.1016/j.envsoft.2017.11.016</a>, .","din1505-2-1":"<span style=\"font-variant:small-caps;\"><span style=\"font-variant:small-caps;\">Bruce, Louise C.</span> ; <span style=\"font-variant:small-caps;\">Frassl, Marieke A.</span> ; <span style=\"font-variant:small-caps;\">Arhonditsis, George B.</span> ; <span style=\"font-variant:small-caps;\">Gal, Gideon</span> ; <span style=\"font-variant:small-caps;\">Hamilton, David P.</span> ; <span style=\"font-variant:small-caps;\">Hanson, Paul C.</span> ; <span style=\"font-variant:small-caps;\">Hetherington, Amy L.</span> ; <span style=\"font-variant:small-caps;\">Melack, John M.</span> ; u. a.</span>: A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. In: <i>Environmental modelling &#38; software with environment data news </i> Bd. 102. Oxford, Elsevier Science (2018), Nr. 4, S. 274–291","ieee":"L. C. Bruce <i>et al.</i>, “A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network,” <i>Environmental modelling &#38; software with environment data news </i>, vol. 102, no. 4, pp. 274–291, 2018, doi: <a href=\"https://doi.org/10.1016/j.envsoft.2017.11.016\">10.1016/j.envsoft.2017.11.016</a>.","ama":"Bruce LC, Frassl MA, Arhonditsis GB, et al. A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. <i>Environmental modelling &#38; software with environment data news </i>. 2018;102(4):274-291. doi:<a href=\"https://doi.org/10.1016/j.envsoft.2017.11.016\">10.1016/j.envsoft.2017.11.016</a>"},"author":[{"full_name":"Bruce, Louise C.","first_name":"Louise C.","last_name":"Bruce"},{"first_name":"Marieke A.","last_name":"Frassl","full_name":"Frassl, Marieke A."},{"full_name":"Arhonditsis, George B.","first_name":"George B.","last_name":"Arhonditsis"},{"full_name":"Gal, Gideon","first_name":"Gideon","last_name":"Gal"},{"last_name":"Hamilton","full_name":"Hamilton, David P.","first_name":"David P."},{"first_name":"Paul C.","last_name":"Hanson","full_name":"Hanson, Paul C."},{"last_name":"Hetherington","full_name":"Hetherington, Amy L.","first_name":"Amy L."},{"full_name":"Melack, John M.","first_name":"John M.","last_name":"Melack"},{"last_name":"Read","first_name":"Jordan S.","full_name":"Read, Jordan S."},{"first_name":"Karsten","full_name":"Rinke, Karsten","last_name":"Rinke"},{"full_name":"Rigosi, Anna","last_name":"Rigosi","first_name":"Anna"},{"last_name":"Trolle","first_name":"Dennis","full_name":"Trolle, Dennis"},{"last_name":"Winslow","first_name":"Luke","full_name":"Winslow, Luke"},{"last_name":"Adrian","first_name":"Rita","full_name":"Adrian, Rita"},{"first_name":"Ana I.","full_name":"Ayala, Ana I.","last_name":"Ayala"},{"first_name":"Serghei A.","last_name":"Bocaniov","full_name":"Bocaniov, Serghei A."},{"full_name":"Boehrer, Bertram","first_name":"Bertram","last_name":"Boehrer"},{"last_name":"Boon","first_name":"Casper","full_name":"Boon, Casper"},{"full_name":"Brookes, Justin D.","last_name":"Brookes","first_name":"Justin D."},{"full_name":"Bueche, Thomas","last_name":"Bueche","first_name":"Thomas"},{"last_name":"Busch","first_name":"Brendan D.","full_name":"Busch, Brendan D."},{"first_name":"Diego","last_name":"Copetti","full_name":"Copetti, Diego"},{"full_name":"Cortés, Alicia","first_name":"Alicia","last_name":"Cortés"},{"last_name":"de Eyto","full_name":"de Eyto, Elvira","first_name":"Elvira"},{"first_name":"J. Alex","last_name":"Elliott","full_name":"Elliott, J. Alex"},{"first_name":"Nicole","last_name":"Gallina","full_name":"Gallina, Nicole"},{"last_name":"Gilboa","full_name":"Gilboa, Yael","first_name":"Yael"},{"last_name":"Guyennon","first_name":"Nicolas","full_name":"Guyennon, Nicolas"},{"full_name":"Huang, Lei","first_name":"Lei","last_name":"Huang"},{"first_name":"Onur","last_name":"Kerimoglu","full_name":"Kerimoglu, Onur"},{"last_name":"Lenters","first_name":"John D.","full_name":"Lenters, John D."},{"last_name":"MacIntyre","first_name":"Sally","full_name":"MacIntyre, Sally"},{"last_name":"Makler-Pick","first_name":"Vardit","full_name":"Makler-Pick, Vardit"},{"first_name":"Chris G.","full_name":"McBride, Chris G.","last_name":"McBride"},{"last_name":"Moreira","first_name":"Santiago","full_name":"Moreira, Santiago"},{"first_name":"Deniz","last_name":"Özkundakci","full_name":"Özkundakci, Deniz"},{"full_name":"Pilotti, Marco","last_name":"Pilotti","first_name":"Marco"},{"last_name":"Rueda","first_name":"Francisco J.","full_name":"Rueda, Francisco J."},{"first_name":"James A.","full_name":"Rusak, James A.","last_name":"Rusak"},{"full_name":"Samal, Nihar R.","first_name":"Nihar R.","last_name":"Samal"},{"full_name":"Schmid, Martin","last_name":"Schmid","first_name":"Martin"},{"first_name":"Tom","full_name":"Shatwell, Tom","last_name":"Shatwell","id":"86424","orcid":"0000-0002-4520-7916"},{"first_name":"Craig","last_name":"Snorthheim","full_name":"Snorthheim, Craig"},{"full_name":"Soulignac, Frédéric","first_name":"Frédéric","last_name":"Soulignac"},{"full_name":"Valerio, Giulia","first_name":"Giulia","last_name":"Valerio"},{"first_name":"Leon","full_name":"van der Linden, Leon","last_name":"van der Linden"},{"full_name":"Vetter, Mark","first_name":"Mark","last_name":"Vetter"},{"last_name":"Vinçon-Leite","full_name":"Vinçon-Leite, Brigitte","first_name":"Brigitte"},{"full_name":"Wang, Junbo","last_name":"Wang","first_name":"Junbo"},{"first_name":"Michael","last_name":"Weber","full_name":"Weber, Michael"},{"full_name":"Wickramaratne, Chaturangi","last_name":"Wickramaratne","first_name":"Chaturangi"},{"first_name":"R. Iestyn","last_name":"Woolway","full_name":"Woolway, R. Iestyn"},{"last_name":"Yao","first_name":"Huaxia","full_name":"Yao, Huaxia"},{"first_name":"Matthew R.","last_name":"Hipsey","full_name":"Hipsey, Matthew R."}],"year":"2018","main_file_link":[{"url":"https://doi.org/10.1016/j.envsoft.2017.11.016"}],"status":"public","page":"274-291","publication_identifier":{"issn":["1364-8152"],"eissn":["1873-6726"]},"publication":"Environmental modelling & software with environment data news ","date_created":"2024-12-08T20:32:07Z","date_updated":"2024-12-09T10:13:47Z","keyword":["Lake model","Stratification","GLM","Model assessment","Global observatory data","Network science"],"language":[{"iso":"eng"}]}]