---
_id: '11377'
abstract:
- lang: eng
  text: <jats:p>consuming and often performed rather empirically. Efficient optimization
    of multiple objectives such as process time, viable cell density, number of operating
    steps &amp; cultivation scales, required medium, amount of product as well as
    product quality depicts a promising approach. This contribution presents a workflow
    which couples uncertainty-based upstream simulation and Bayes optimization using
    Gaussian processes. Its application is demonstrated in a simulation case study
    for a relevant industrial task in process development, the design of a robust
    cell culture expansion process (seed train), meaning that despite uncertainties
    and variabilities concerning cell growth, low variations of viable cell density
    during the seed train are obtained. Compared to a non-optimized reference seed
    train, the optimized process showed much lower deviation rates regarding viable
    cell densities (&lt;10% instead of 41.7%) using five or four shake flask scales
    and seed train duration could be reduced by 56 h from 576 h to 520 h. Overall,
    it is shown that applying Bayes optimization allows for optimization of a multi-objective
    optimization function with several optimizable input variables and under a considerable
    amount of constraints with a low computational effort. This approach provides
    the potential to be used in the form of a decision tool, e.g., for the choice
    of an optimal and robust seed train design or for further optimization tasks within
    process development.
article_number: '883'
author:
- first_name: Tanja
  full_name: Hernández Rodriguez, Tanja
  id: '52466'
  last_name: Hernández Rodriguez
- first_name: Anton
  full_name: Sekulic, Anton
  last_name: Sekulic
- first_name: Markus
  full_name: Lange-Hegermann, Markus
  id: '71761'
  last_name: Lange-Hegermann
- first_name: Björn
  full_name: Frahm, Björn
  id: '45666'
  last_name: Frahm
citation:
  ama: Hernández Rodriguez T, Sekulic A, Lange-Hegermann M, Frahm B. Designing Robust
    Biotechnological Processes Regarding Variabilities Using Multi-Objective Optimization
    Applied to a Biopharmaceutical Seed Train Design. <i>Processes</i>. 2022;10(5).
    doi:<a href="https://doi.org/10.3390/pr10050883">10.3390/pr10050883</a>
  apa: Hernández Rodriguez, T., Sekulic, A., Lange-Hegermann, M., &#38; Frahm, B.
    (2022). Designing Robust Biotechnological Processes Regarding Variabilities Using
    Multi-Objective Optimization Applied to a Biopharmaceutical Seed Train Design.
    <i>Processes</i>, <i>10</i>(5), Article 883. <a href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>
  bjps: <b>Hernández Rodriguez T <i>et al.</i></b> (2022) Designing Robust Biotechnological
    Processes Regarding Variabilities Using Multi-Objective Optimization Applied to
    a Biopharmaceutical Seed Train Design. <i>Processes</i> <b>10</b>.
  chicago: Hernández Rodriguez, Tanja, Anton Sekulic, Markus Lange-Hegermann, and
    Björn Frahm. “Designing Robust Biotechnological Processes Regarding Variabilities
    Using Multi-Objective Optimization Applied to a Biopharmaceutical Seed Train Design.”
    <i>Processes</i> 10, no. 5 (2022). <a href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>.
  chicago-de: Hernández Rodriguez, Tanja, Anton Sekulic, Markus Lange-Hegermann und
    Björn Frahm. 2022. Designing Robust Biotechnological Processes Regarding Variabilities
    Using Multi-Objective Optimization Applied to a Biopharmaceutical Seed Train Design.
    <i>Processes</i> 10, Nr. 5. doi:<a href="https://doi.org/10.3390/pr10050883">10.3390/pr10050883</a>,
    .
  din1505-2-1: '<span style="font-variant:small-caps;">Hernández Rodriguez, Tanja</span>
    ; <span style="font-variant:small-caps;">Sekulic, Anton</span> ; <span style="font-variant:small-caps;">Lange-Hegermann,
    Markus</span> ; <span style="font-variant:small-caps;">Frahm, Björn</span>: Designing
    Robust Biotechnological Processes Regarding Variabilities Using Multi-Objective
    Optimization Applied to a Biopharmaceutical Seed Train Design. In: <i>Processes</i>
    Bd. 10. Basel, MDPI AG (2022), Nr. 5'
  havard: T. Hernández Rodriguez, A. Sekulic, M. Lange-Hegermann, B. Frahm, Designing
    Robust Biotechnological Processes Regarding Variabilities Using Multi-Objective
    Optimization Applied to a Biopharmaceutical Seed Train Design, Processes. 10 (2022).
  ieee: 'T. Hernández Rodriguez, A. Sekulic, M. Lange-Hegermann, and B. Frahm, “Designing
    Robust Biotechnological Processes Regarding Variabilities Using Multi-Objective
    Optimization Applied to a Biopharmaceutical Seed Train Design,” <i>Processes</i>,
    vol. 10, no. 5, Art. no. 883, 2022, doi: <a href="https://doi.org/10.3390/pr10050883">10.3390/pr10050883</a>.'
  mla: Hernández Rodriguez, Tanja, et al. “Designing Robust Biotechnological Processes
    Regarding Variabilities Using Multi-Objective Optimization Applied to a Biopharmaceutical
    Seed Train Design.” <i>Processes</i>, vol. 10, no. 5, 883, 2022, <a href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>.
  short: T. Hernández Rodriguez, A. Sekulic, M. Lange-Hegermann, B. Frahm, Processes
    10 (2022).
  ufg: '<b>Hernández Rodriguez, Tanja u. a.</b>: Designing Robust Biotechnological
    Processes Regarding Variabilities Using Multi-Objective Optimization Applied to
    a Biopharmaceutical Seed Train Design, in: <i>Processes</i> 10 (2022), H. 5.'
  van: Hernández Rodriguez T, Sekulic A, Lange-Hegermann M, Frahm B. Designing Robust
    Biotechnological Processes Regarding Variabilities Using Multi-Objective Optimization
    Applied to a Biopharmaceutical Seed Train Design. Processes. 2022;10(5).
date_created: 2024-04-25T13:35:04Z
date_updated: 2024-05-21T09:30:15Z
department:
- _id: DEP4000
doi: 10.3390/pr10050883
intvolume: '        10'
issue: '5'
keyword:
- Gaussian processes
- Bayes optimization
- Pareto optimization
- multi-objective
- cell culture
- seed train
language:
- iso: eng
place: Basel
publication: Processes
publication_identifier:
  eissn:
  - 2227-9717
publication_status: published
publisher: MDPI AG
status: public
title: Designing Robust Biotechnological Processes Regarding Variabilities Using Multi-Objective
  Optimization Applied to a Biopharmaceutical Seed Train Design
type: scientific_journal_article
user_id: '83781'
volume: 10
year: '2022'
...
---
_id: '10193'
abstract:
- lang: eng
  text: Development and optimization of biopharmaceutical production processes with
    cell cultures is cost- and time-consuming and often performed rather empirically.
    Efficient optimization of multiple objectives such as process time, viable cell
    density, number of operating steps & cultivation scales, required medium, amount
    of product as well as product quality depicts a promising approach. This contribution
    presents a workflow which couples uncertainty-based upstream simulation and Bayes
    optimization using Gaussian processes. Its application is demonstrated in a simulation
    case study for a relevant industrial task in process development, the design of
    a robust cell culture expansion process (seed train), meaning that despite uncertainties
    and variabilities concerning cell growth, low variations of viable cell density
    during the seed train are obtained. Compared to a non-optimized reference seed
    train, the optimized process showed much lower deviation rates regarding viable
    cell densities (<10% instead of 41.7%) using five or four shake flask scales and
    seed train duration could be reduced by 56 h from 576 h to 520 h. Overall, it
    is shown that applying Bayes optimization allows for optimization of a multi-objective
    optimization function with several optimizable input variables and under a considerable
    amount of constraints with a low computational effort. This approach provides
    the potential to be used in the form of a decision tool, e.g., for the choice
    of an optimal and robust seed train design or for further optimization tasks within
    process development.
author:
- first_name: Tanja
  full_name: Hernández Rodriguez, Tanja
  id: '52466'
  last_name: Hernández Rodriguez
- first_name: Anton
  full_name: Sekulic, Anton
  last_name: Sekulic
- first_name: Markus
  full_name: Lange-Hegermann, Markus
  id: '71761'
  last_name: Lange-Hegermann
- first_name: Björn
  full_name: Frahm, Björn
  id: '45666'
  last_name: Frahm
citation:
  ama: 'Hernández Rodriguez T, Sekulic A, Lange-Hegermann M, Frahm B. Designing robust
    biotechnological processes regarding variabilities using multi-objective optimization
    applied to a biopharmaceutical seed train design. In: Pörtner R, Möller J, eds.
    <i>Bioprocess Systems Engineering Applications in Pharmaceutical Manufacturing</i>.
    Vol special issue. Processes : open access journal. MDPI; 2022:21-48. doi:<a href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>'
  apa: 'Hernández Rodriguez, T., Sekulic, A., Lange-Hegermann, M., &#38; Frahm, B.
    (2022). Designing robust biotechnological processes regarding variabilities using
    multi-objective optimization applied to a biopharmaceutical seed train design.
    In R. Pörtner &#38; J. Möller (Eds.), <i>Bioprocess Systems Engineering Applications
    in Pharmaceutical Manufacturing: Vol. special issue</i> (pp. 21–48). MDPI. <a
    href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>'
  bjps: '<b>Hernández Rodriguez T <i>et al.</i></b> (2022) Designing Robust Biotechnological
    Processes Regarding Variabilities Using Multi-Objective Optimization Applied to
    a Biopharmaceutical Seed Train Design. In Pörtner R and Möller J (eds), <i>Bioprocess
    Systems Engineering Applications in Pharmaceutical Manufacturing</i>, vol. special
    issue. Basel: MDPI, pp. 21–48.'
  chicago: 'Hernández Rodriguez, Tanja, Anton Sekulic, Markus Lange-Hegermann, and
    Björn Frahm. “Designing Robust Biotechnological Processes Regarding Variabilities
    Using Multi-Objective Optimization Applied to a Biopharmaceutical Seed Train Design.”
    In <i>Bioprocess Systems Engineering Applications in Pharmaceutical Manufacturing</i>,
    edited by Ralf Pörtner and Johannes Möller, special issue:21–48. Processes : Open
    Access Journal. Basel: MDPI, 2022. <a href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>.'
  chicago-de: 'Hernández Rodriguez, Tanja, Anton Sekulic, Markus Lange-Hegermann und
    Björn Frahm. 2022. Designing robust biotechnological processes regarding variabilities
    using multi-objective optimization applied to a biopharmaceutical seed train design.
    In: <i>Bioprocess Systems Engineering Applications in Pharmaceutical Manufacturing</i>,
    hg. von Ralf Pörtner und Johannes Möller, special issue:21–48. Processes : open
    access journal. Basel: MDPI. doi:<a href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>,
    .'
  din1505-2-1: '<span style="font-variant:small-caps;">Hernández Rodriguez, Tanja</span>
    ; <span style="font-variant:small-caps;">Sekulic, Anton</span> ; <span style="font-variant:small-caps;">Lange-Hegermann,
    Markus</span> ; <span style="font-variant:small-caps;">Frahm, Björn</span>: Designing
    robust biotechnological processes regarding variabilities using multi-objective
    optimization applied to a biopharmaceutical seed train design. In: <span style="font-variant:small-caps;">Pörtner,
    R.</span> ; <span style="font-variant:small-caps;">Möller, J.</span> (Hrsg.):
    <i>Bioprocess Systems Engineering Applications in Pharmaceutical Manufacturing</i>,
    <i>Processes : open access journal</i>. Bd. special issue. Basel : MDPI, 2022,
    S. 21–48'
  havard: 'T. Hernández Rodriguez, A. Sekulic, M. Lange-Hegermann, B. Frahm, Designing
    robust biotechnological processes regarding variabilities using multi-objective
    optimization applied to a biopharmaceutical seed train design, in: R. Pörtner,
    J. Möller (Eds.), Bioprocess Systems Engineering Applications in Pharmaceutical
    Manufacturing, MDPI, Basel, 2022: pp. 21–48.'
  ieee: 'T. Hernández Rodriguez, A. Sekulic, M. Lange-Hegermann, and B. Frahm, “Designing
    robust biotechnological processes regarding variabilities using multi-objective
    optimization applied to a biopharmaceutical seed train design,” in <i>Bioprocess
    Systems Engineering Applications in Pharmaceutical Manufacturing</i>, vol. special
    issue, R. Pörtner and J. Möller, Eds. Basel: MDPI, 2022, pp. 21–48. doi: <a href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>.'
  mla: Hernández Rodriguez, Tanja, et al. “Designing Robust Biotechnological Processes
    Regarding Variabilities Using Multi-Objective Optimization Applied to a Biopharmaceutical
    Seed Train Design.” <i>Bioprocess Systems Engineering Applications in Pharmaceutical
    Manufacturing</i>, edited by Ralf Pörtner and Johannes Möller, vol. special issue,
    MDPI, 2022, pp. 21–48, <a href="https://doi.org/10.3390/pr10050883">https://doi.org/10.3390/pr10050883</a>.
  short: 'T. Hernández Rodriguez, A. Sekulic, M. Lange-Hegermann, B. Frahm, in: R.
    Pörtner, J. Möller (Eds.), Bioprocess Systems Engineering Applications in Pharmaceutical
    Manufacturing, MDPI, Basel, 2022, pp. 21–48.'
  ufg: '<b>Hernández Rodriguez, Tanja u. a.</b>: Designing robust biotechnological
    processes regarding variabilities using multi-objective optimization applied to
    a biopharmaceutical seed train design, in: <i>Pörtner, Ralf/Möller, Johannes (Hgg.)</i>:
    Bioprocess Systems Engineering Applications in Pharmaceutical Manufacturing, Band
    <i>special issue</i>, Basel 2022 (Processes : open access journal),  S. 21–48.'
  van: 'Hernández Rodriguez T, Sekulic A, Lange-Hegermann M, Frahm B. Designing robust
    biotechnological processes regarding variabilities using multi-objective optimization
    applied to a biopharmaceutical seed train design. In: Pörtner R, Möller J, editors.
    Bioprocess Systems Engineering Applications in Pharmaceutical Manufacturing. Basel:
    MDPI; 2022. p. 21–48. (Processes : open access journal; vol. special issue).'
date_created: 2023-08-08T12:58:36Z
date_updated: 2023-08-16T09:24:16Z
department:
- _id: DEP4000
doi: https://doi.org/10.3390/pr10050883
editor:
- first_name: Ralf
  full_name: Pörtner, Ralf
  last_name: Pörtner
- first_name: Johannes
  full_name: Möller, Johannes
  last_name: Möller
keyword:
- Gaussian processes
- Bayes optimization
- Pareto optimization
- multi-objective
- cell culture
- seed train
language:
- iso: eng
page: 21-48
place: Basel
publication: Bioprocess Systems Engineering Applications in Pharmaceutical Manufacturing
publication_identifier:
  eisbn:
  - 978-3-0365-5209-5
  eissn:
  - 2227-9717
  isbn:
  - 978-3-0365-5210-1
publication_status: published
publisher: MDPI
quality_controlled: '1'
series_title: 'Processes : open access journal'
status: public
title: Designing robust biotechnological processes regarding variabilities using multi-objective
  optimization applied to a biopharmaceutical seed train design
type: book_chapter
user_id: '83781'
volume: special issue
year: '2022'
...